ISPConfig 3 has two different configuration files, one for the server part and one for the interface. Interface: /usr/local/ispconfig/interface/lib/config.inc.php Server: /usr/local/ispconfig/server/lib/config.inc.php The mysql root password which is only used to create new mysql databases is stored in the file: /usr/local/ispconfig/server/lib/mysql_clientdb.conf
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